Overview

The research at the Plant and Animal Genomics Programme is mainly focused on understanding the organization, evolution and variability of the genomes of crops and domestic animals, unveiling their domestication process and elucidating the genetic basis of traits important for crop and livestock improvement.

The Programme is structured in six research groups, which routinely use a wide range of genetic, genomic, paleogenomic, bioinformatic, statistical, population genetics and phenotypic approaches in crops such as melon, peach, apple, strawberry and wheat, and livestock species such as pig and goat, among others. We develop bioinformatics methodologies and software tools for genome data analysis. We also apply gene editing technologies for the functional validation of candidate genes for traits of interest. 

The main objective of the Plant and Animal Genomics Programme is translating genomic information into phenotypes, for this reason some of our research activities are applied to commercial breeding programmes in collaboration with private companies and public institutions.

Publications

Gòdia, M., Estill, M., Castelló, A., Balasch, S., Rodríguez-Gil, J.E., Krawetz, S.A., Sánchez, A., Clop, A.

A RNA-seq analysis to describe the boar sperm transcriptome and its seasonal changes (2019) Frontiers in Genetics, vol. 10 (MAR), Art. number 299 (DOI:10.3389/fgene.2019.00299)

Dufflocq, P., Pérez-Enciso, M., Lhorente, J.P., Yáñez, J.M.

Accuracy of genomic predictions using different imputation error rates in aquaculture breeding programs: A simulation study (2019) Aquaculture, vol. 503 pp. 225 -230 (DOI:10.1016/j.aquaculture.2018.12.061)

González-Prendes, R., Quintanilla, R., Mármol-Sánchez, E., Pena, R.N., Ballester, M., Cardoso, T.F., Manunza, A., Casellas, J., Cánovas, Á., Díaz, I., Noguera, J.L., Castelló, A., Mercadé, A., Amills, M.

Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles (2019) BMC Genomics, vol. 20 (1), Art. number 170 (DOI:10.1186/s12864-019-5557-9)

Zheng, Y., Wu, S., Bai, Y., Sun, H., Jiao, C., Guo, S., Zhao, K., Blanca, J., Zhang, Z., Huang, S., Xu, Y., Weng, Y., Mazourek, M., Reddy, U.K., Ando, K., McCreight, J.D., Schaffer, A.A., Burger, J., Tadmor, Y., Katzir, N., Tang, X., Liu, Y., Giovannoni, J.J., Ling, K.-S., Wechter, W.P., Levi, A., Garcia-Mas, J., Grumet, R., Fei, Z.

Cucurbit Genomics Database (CuGenDB): A central portal for comparative and functional genomics of cucurbit crops (2019) Nucleic Acids Research, vol. 47 (D1), pp. D1128 -D1136 (DOI:10.1093/nar/gky944)

Sequeira-Mendes, J., Vergara, Z., Peiró, R., Morata, J., Aragüez, I., Costas, C., Mendez-Giraldez, R., Casacuberta, J.M., Bastolla, U., Gutierrez, C.

Differences in firing efficiency, chromatin, and transcription underlie the developmental plasticity of the Arabidopsis DNA replication origins (2019) Genome Research, vol. 29 (5), pp. 784 -797 (DOI:10.1101/gr.240986.118)