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Plant and Animal Genomics

The aims of the Plant and Animal Genomics Program are to understand the genome organization, variability and evolution of different crops and domestic animals and to elucidate the genetics of important traits of species of agricultural interest.

To this end we are using a panoply of genetics, genomics and bioinformatic approaches which we apply to a wide array of plant and animal species, including cucurbits and different Rosaceae species, as well as pigs and goats. The Program also works in developing new bioinformatics methods and software tools to analyze the data generated by different NGS approaches.

The final objectives of the Program are to improve our knowledge on the structure and evolution of complex genomes as well as to develop methodological approaches that can be applied to commercial breeding programs through contracts with companies or agreements with public organizations.

Pages

Publications

Cirera S., Clop A., Jacobsen M.J., Guerin M., Lesnik P., Jørgensen C.B., Fredholm M., Karlskov-Mortensen P.
(2018) Animal Genetics, vol. 49 (2), pp. 110-118
Gòdia M., Mayer F.Q., Nafissi J., Castelló A., Rodríguez-Gil J.E., Sánchez A., Clop A.
(2018) Systems Biology in Reproductive Medicine (Article in Press), pp. 1-13
Laurens F., Aranzana M.J., Arus P., Bassi D., Bink M., Bonany J., Caprera A., Corelli-Grappadelli L., Costes E., Durel C.-E., Mauroux J.-B., Muranty H., Nazzicari N., Pascal T., Patocchi A., Peil A., Quilot-Turion B., Rossini L., Stella A., Troggio M., Velasco R., Van De Weg E.
(2018) Horticulture Research, vol. 5 (1), Art. number 11
Ginja C., Cortés O., Gama L.T., Delgado J.V., Amills M., De Sousa C.B., Cañón J., Capote J., Dunner S., Ferrando A., Carpio M.G., Gómez M., Jordana J., Landi V., Manunza A., Martin-Burriel I., Barro A.P., Rodellar C., Santos-Silva F., Sevane N., Vidal O., Zaragoza P., Martínez A.M.
(2018) Sustainable Goat Production in Adverse Environments, vol. 1, pp. 509-533
Cardoso T.F., Quintanilla R., Castelló A., González-Prendes R., Amills M., Cánovas
(2018) BMC Genomics, vol. 19 (1), Art. number 145
Sevane N., Cortés O., Gama L.T., Martínez A., Zaragoza P., Amills M., Bedotti D.O., Bruno de Sousa C., Cañon J., Dunner S., Ginja C., Lanari M.R., Landi V., Sponenberg P., Delgado J.V., The Biogoat Consortium A
(2018) Animal (Article in Press), pp. 1-10
Revilla M., Puig-Oliveras A., Crespo-Piazuelo D., Criado-Mesas L., Castelló A., Fernández A.I., Ballester M., Folch J.M.
(2018) Scientific Reports, vol. 8 (1), Art. number 2045
Goonetilleke S.N., March T.J., Wirthensohn M.G., Arús P., Walker A.R., Mather D.E.
(2018) G3: Genes, Genomes, Genetics, vol. 8 (1), pp. 161-172
Guirao-Rico S., Ramirez O., Ojeda A., Amills M., Ramos-Onsins S.E.
(2018) Heredity, vol. 120 (1), pp. 63-76
Naval-Sanchez M., Nguyen Q., McWilliam S., Porto-Neto L.R., Tellam R., Vuocolo T., Reverter A., Perez-Enciso M., Brauning R., Clarke S., McCulloch A., Zamani W., Naderi S., Rezaei H.R., Pompanon F., Taberlet P., Worley K.C., Gibbs R.A., Muzny D.M., Jhangiani S.N., Cockett N., Daetwyler H., Kijas J.
(2018) Nature Communications, vol. 9 (1), Art. number 859
Sastre N., Calvete O., Martínez-Vargas J., Medarde N., Casellas J., Altet L., Sánchez A., Francino O., Ventura J.
(2018) Parasitology Research (Article in Press), pp. 1-10
Ninot A., Howad W., Aranzana M.J., Senar R., Romero A., Mariotti R., Baldoni L., Belaj A.
(2018) Scientia Horticulturae, vol. 231, pp. 253-264
Kirikci K., Noce A., Cam M.A., Mercan L., Amills M.
(2018) Small Ruminant Research, vol. 162, pp. 25-29
Lang D., Ullrich K.K., Murat F., Fuchs J., Jenkins J., Haas F.B., Piednoel M., Gundlach H., Van Bel M., Meyberg R., Vives C., Morata J., Symeonidi A., Hiss M., Muchero W., Kamisugi Y., Saleh O., Blanc G., Decker E.L., van Gessel N., Grimwood J., Hayes R.D., Graham S.W., Gunter L.E., McDaniel S.F., Hoernstein S.N.W., Larsson A., Li F.-W., Perroud P.-F., Phillips J., Ranjan P., Rokshar D.S., Rothfels C.J., Schneider L., Shu S., Stevenson D.W., Thümmler F., Tillich M., Villarreal Aguilar J.C., Widiez T., Wong G.K.-S., Wymore A., Zhang Y., Zimmer A.D., Quatrano R.S., Mayer K.F.X., Goodstein D., Casacuberta J.M., Vandepoele K., Reski R., Cuming A.C., Tuskan G.A., Maumus F., Salse J., Schmutz J., Rensing S.A.
(2018) Plant Journal, vol. 93 (3), pp. 515-533
Martínez-Montes Á.M., Fernández A., Muñoz M., Noguera J.L., Folch J.M., Fernández A.I.
(2018) PLoS ONE, vol. 13 (3), Art. number e0190184
López-Girona E., Zhang Y., Eduardo I., Mora J.R.H., Alexiou K.G., Arús P., Aranzana M.J.
(2017) Scientific Reports, vol. 7 (1), Art. number 6714
Eusebi P.G., González-Prendes R., Quintanilla R., Tibau J., Cardoso T.F., Clop A., Amills M.
(2017) Animal Genetics, vol. 48 (4), pp. 466-469
Giner A., Pascual L., Bourgeois M., Gyetvai G., Rios P., Picó B., Troadec C., Bendahmane A., Garcia-Mas J., Martín-Hernández A.M.
(2017) Scientific Reports, vol. 7 (1), Art. number 10471
Leno-Colorado J., Hudson N.J., Reverter A., Pérez-Enciso M.
(2017) G3: Genes, Genomes, Genetics, vol. 7 (7), pp. 2171-2184
Tenreira T., Pimenta Lange M.J., Lange T., Bres C., Labadie M., Monfort A., Hernould M., Rothan C., Denoyes B.
(2017) Plant Cell, vol. 29 (9), pp. 2168-2182
Pérez-Enciso M.
(2017) Journal of Animal Breeding and Genetics, vol. 134 (2), pp. 85-86
Ballester M., Puig-Oliveras A., Castelló A., Revilla M., Fernández A.I., Folch J.M.
(2017) Animal Genetics, vol. 48 (6), pp. 660-668
Rodriguez-Cortes A., Martori C., Martinez-Florez A., Clop A., Amills M., Kubejko J., Llull J., Nadal J.M., Alberola J.
(2017) Scientific Reports, vol. 7 (1), Art. number 3346
Cuscó A., Sánchez A., Altet L., Ferrer L., Francino O.
(2017) Frontiers in Veterinary Science, vol. 4 (JUL), Art. number 119
Martínez-Montes A.M., Muiños-Bühl A., Fernández A., Folch J.M., Ibáñez-Escriche N., Fernández A.I.
(2017) Mammalian Genome, vol. 28 (3-4), pp. 130-142
Ferretti L., Ledda A., Wiehe T., Achaz G., Ramos-Onsins S.E.
(2017) Genetics, vol. 207 (1), pp. 229-240
Verma S., Bassil N.V., Van De Weg E., Harrison R.J., Monfort A., Hidalgo J.M., Amaya I., Denoyes B., Mahoney L.L., Davis T.M., Fan Z., Knapp S., Whitaker V.M.
(2017) Acta Horticulturae, vol. 1156, pp. 75-81
Vidal O., Drögemüller C., Obexer-Ruff G., Reber I., Jordana J., Martínez A., Bâlteanu V.A., Delgado J.V., Eghbalsaied S., Landi V., Goyache F., Traoré A., Pazzola M., Vacca G.M., Badaoui B., Pilla F., D'Andrea M., Álvarez I., Capote J., Sharaf A., Pons À., Amills M.
(2017) Scientific Reports, vol. 7 (1), Art. number 16161
Núñez-Hernández F., Pérez L.J., Muñoz M., Vera G., Accensi F., Sánchez A., Rodríguez F., Núñez J.I.
(2017) Virology Journal, vol. 14 (1), Art. number 198
Mora J.R.H., Micheletti D., Bink M.C.A.M., Van De Weg W.E., Bassi D., Nazzicari N., Caprera A., Dettori M.T., Micali S., Dirlewanger E., Lambert P., Pascal T., Banchi E., Troggio M., Rossini L., Verde I., Quilot-Turion B., Laurens F., Arús P., Aranzana M.J.
(2017) Acta Horticulturae, vol. 1172, pp. 405-410

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