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Plant and Animal Genomics

The aims of the Plant and Animal Genomics Program are to understand the genome organization, variability and evolution of different crops and domestic animals and to elucidate the genetics of important traits of species of agricultural interest.

To this end we are using a panoply of genetics, genomics and bioinformatic approaches which we apply to a wide array of plant and animal species, including cucurbits and different Rosaceae species, as well as pigs and goats. The Program also works in developing new bioinformatics methods and software tools to analyze the data generated by different NGS approaches.

The final objectives of the Program are to improve our knowledge on the structure and evolution of complex genomes as well as to develop methodological approaches that can be applied to commercial breeding programs through contracts with companies or agreements with public organizations.

Pages

Publications

Cirera S., Clop A., Jacobsen M.J., Guerin M., Lesnik P., Jørgensen C.B., Fredholm M., Karlskov-Mortensen P.
(2018) Animal Genetics, vol. 49 (2), pp. 110-118
Gòdia M., Mayer F.Q., Nafissi J., Castelló A., Rodríguez-Gil J.E., Sánchez A., Clop A.
(2018) Systems Biology in Reproductive Medicine, vol. 64 (4), pp. 291-303
Stella A., Nicolazzi E.L., Van Tassell C.P., Rothschild M.F., Colli L., Rosen B.D., Sonstegard T.S., Crepaldi P., Tosser-Klopp G., Joost S., Amills M., Ajmone-Marsan P., Bertolini F., Boettcher P., Boyle Onzima R., Bradley D., Buja D., Cano Pereira M.E., Carta A., Catillo G., Crisà A., Del Corvo M., Daly K., Droegemueller C., Duruz S., Elbeltagi A., Esmailizadeh A., Faco O., Figueiredo Cardoso T., Flury C., Garcia J.F., Guldbrandtsen B., Haile A., Hallsteinn Hallsson J., Heaton M., Hunnicke Nielsen V., Huson H., Kijas J., Lenstra J.A., Marras G., Milanesi M., Minhui C., Moaeen-Ud-Din M., Morry O'Donnell R., Moses Danlami O., Mwacharo J., Palhière I., Pilla F., Poli M., Reecy J., Rischkowsky B.A., Rochat E., Rupp R., Sayre B., Servin B., Silva K., Spangler G., Steri R., Talenti A., Tortereau F., Vajana E., Zhang W.
(2018) Genetics Selection Evolution, vol. 50 (1), Art. number 61
Núñez-Hernández F., Vera G., Sánchez A., Rodríguez F., Núñez J.I.
(2018) BMC Veterinary Research, vol. 14 (1), Art. number 268
Ruggieri V., Alexiou K.G., Morata J., Argyris J., Pujol M., Yano R., Nonaka S., Ezura H., Latrasse D., Boualem A., Benhamed M., Bendahmane A., Cigliano R.A., Sanseverino W., Puigdomènech P., Casacuberta J.M., Garcia-Mas J.
(2018) Scientific Reports, vol. 8 (1), Art. number 8088
Laurens F., Aranzana M.J., Arus P., Bassi D., Bink M., Bonany J., Caprera A., Corelli-Grappadelli L., Costes E., Durel C.-E., Mauroux J.-B., Muranty H., Nazzicari N., Pascal T., Patocchi A., Peil A., Quilot-Turion B., Rossini L., Stella A., Troggio M., Velasco R., Van De Weg E.
(2018) Horticulture Research, vol. 5 (1), Art. number 11
Cardoso T.F., Quintanilla R., Castelló A., Mármol-Sánchez E., Ballester M., Jordana J., Amills M.
(2018) Frontiers in Genetics, vol. 9 (OCT), Art. number 475
Dettori M.L., Pazzola M., Paschino P., Amills M., Vacca G.M.
(2018) Journal of Dairy Science, vol. 101 (11), pp. 9978-9986
Foster T.M., Aranzana M.J.
(2018) Horticulture Research, vol. 5 (1), Art. number 44
Bellot P., de Los Campos G., Pérez-Enciso M.
(2018) Genetics, vol. 210 (3), pp. 809-819
Crespo-Piazuelo D., Estellé J., Revilla M., Criado-Mesas L., Ramayo-Caldas Y., Óvilo C., Fernández A.I., Ballester M., Folch J.M.
(2018) Scientific Reports, vol. 8 (1), Art. number 12727
Ginja C., Cortés O., Gama L.T., Delgado J.V., Amills M., De Sousa C.B., Cañón J., Capote J., Dunner S., Ferrando A., Carpio M.G., Gómez M., Jordana J., Landi V., Manunza A., Martin-Burriel I., Barro A.P., Rodellar C., Santos-Silva F., Sevane N., Vidal O., Zaragoza P., Martínez A.M.
(2018) Sustainable Goat Production in Adverse Environments, vol. 1, pp. 509-533
Cardoso T.F., Quintanilla R., Castelló A., González-Prendes R., Amills M., Cánovas
(2018) BMC Genomics, vol. 19 (1), Art. number 145
Sevane N., Cortés O., Gama L.T., Martínez A., Zaragoza P., Amills M., Bedotti D.O., Bruno de Sousa C., Cañon J., Dunner S., Ginja C., Lanari M.R., Landi V., Sponenberg P., Delgado J.V., The Biogoat Consortium A
(2018) Animal (Article in Press), pp. 1-10
Casacuberta J.M., Puigdomènech P.
(2018) Nature, vol. 561 (7721), pp. 33
Revilla M., Puig-Oliveras A., Crespo-Piazuelo D., Criado-Mesas L., Castelló A., Fernández A.I., Ballester M., Folch J.M.
(2018) Scientific Reports, vol. 8 (1), Art. number 2045
Noce A., Cardoso T.F., Manunza A., Martínez A., Cánovas A., Pons A., Bermejo L.A., Landi V., Sànchez A., Jordana J., Delgado J.V., Adán S., Capote J., Vidal O., Pazzola M., Vacca G.M., Casellas J., Amills M.
(2018) Scientific Reports, vol. 8 (1), Art. number 10486
Rodriguez-Valera Y., Renand G., Naves M., Fonseca-Jiménez Y., Moreno-Probance T.I., Ramos-Onsins S., Rocha D., Ramayo-Caldas Y.
(2018) Scientific Reports, vol. 8 (1), Art. number 11005
Lü P., Yu S., Zhu N., Chen Y.-R., Zhou B., Pan Y., Tzeng D., Fabi J.P., Argyris J., Garcia-Mas J., Ye N., Zhang J., Grierson D., Xiang J., Fei Z., Giovannoni J., Zhong S.
(2018) Nature Plants, vol. 4 (10), pp. 784-791
Bertolini F., Cardoso T.F., Marras G., Nicolazzi E.L., Rothschild M.F., Amills M.
(2018) Genetics Selection Evolution, vol. 50 (1), Art. number 59
Goonetilleke S.N., March T.J., Wirthensohn M.G., Arús P., Walker A.R., Mather D.E.
(2018) G3: Genes, Genomes, Genetics, vol. 8 (1), pp. 161-172
da Silva Linge C., Antanaviciute L., Abdelghafar A., Arús P., Bassi D., Rossini L., Ficklin S., Gasic K.
(2018) PloS one, vol. 13 (11), pp. e0207724
Iacolina L., Pertoldi C., Amills M., Kusza S., Megens H.-J., Bâlteanu V.A., Bakan J., Cubric-Curic V., Oja R., Saarma U., Scandura M., Šprem N., Stronen A.V.
(2018) Scientific Reports, vol. 8 (1), Art. number 17372
Cantín C.M., Arús P., Eduardo I.
(2018) BMC Research Notes, vol. 11 (1), Art. number 386
Cardoso T.F., Amills M., Bertolini F., Rothschild M., Marras G., Boink G., Jordana J., Capote J., Carolan S., Hallsson J.H., Kantanen J., Pons A., Lenstra J.A.
(2018) Genetics Selection Evolution, vol. 50 (1), Art. number 56
Morata J., Marín F., Payet J., Casacuberta J.M.
(2018) Genome Biology and Evolution, vol. 10 (5), pp. 1210-1220
Guirao-Rico S., Ramirez O., Ojeda A., Amills M., Ramos-Onsins S.E.
(2018) Heredity, vol. 120 (1), pp. 63-76
Casacuberta J.M., Puigdomènech P.
(2018) EMBO Reports, vol. 19 (10), Art. number e46907
Hudson N.J., Naval-Sánchez M., Porto-Neto L., Pérez-Enciso M., Reverter A.
(2018) Journal of Animal Science, vol. 96 (8), pp. 3064-3069
Ballester M., Amills M., González-Rodríguez O., Cardoso T.F., Pascual M., González-Prendes R., Panella-Riera N., Díaz I., Tibau J., Quintanilla R.
(2018) BMC Genomics, vol. 19 (1), Art. number 682

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